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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name List of Terms
1 AEO Anatomical Entity Ontology Excel format
2 AERO Adverse Event Reporting Ontology Excel format
3 APO Ascomycete phenotype ontology Excel format
4 ATO Amphibian taxonomy Excel format
5 BAO BioAssay Ontology Excel format
6 BCGO Beta Cell Genomics Ontology Excel format
7 BCO Biological Collections Ontology Excel format
8 BFO Basic Formal Ontology Excel format
9 BFO11 Basic Formal Ontology (BFO) 1.1 Excel format
10 BILA Bilateria anatomy Excel format
11 BSPO Biological Spatial Ontology Excel format
12 BTO BRENDA tissue / enzyme source Excel format
13 CARO Common Anatomy Reference Ontology Excel format
14 CDAO Comparative Data Analysis Ontology Excel format
15 CHEBI Chemical entities of biological interest Excel format
16 CHEMINF Chemical Information Ontology Excel format
17 CHMO Chemical Methods Ontology Excel format
18 CL Cell type Excel format
19 CLO Cell Line Ontology Excel format
20 CMO Clinical measurement ontology Excel format
21 CVDO Cardiovascular Disease Ontology Excel format
22 d-acts Ontology of Document Acts Excel format
23 DC_CL Dendritic cell Excel format
24 DDANAT Dictyostelium discoideum anatomy Excel format
25 DOID Human disease ontology Excel format
26 DRON The Drug Ontology Excel format
27 ECO Evidence codes Excel format
28 EDAM EMBRACE Data and Methods Excel format
29 EFO Experimental Factor Ontology Excel format
30 EHDA Human developmental anatomy, timed version Excel format
31 EHDAA Human developmental anatomy, abstract version Excel format
32 EHDAA2 Human developmental anatomy, abstract version, v2 Excel format
33 EMAP Mouse gross anatomy and development, timed Excel format
34 EMAPA Mouse gross anatomy and development, abstract Excel format
35 ENVO Environment Ontology Excel format
36 EO Plant Environmental Conditions Excel format
37 EPO Epidemiology Ontology Excel format
38 ERO eagle-i resource ontology Excel format
39 FAO Fungal gross anatomy Excel format
40 FBbi Biological imaging methods Excel format
41 FBbt Drosophila gross anatomy Excel format
42 FBcv FlyBase Controlled Vocabulary Excel format
43 FBdv Drosophila development Excel format
44 FBsp Fly taxonomy Excel format
45 FIX Physico-chemical methods and properties Excel format
46 FLU Influenza Ontology Excel format
47 FMA Foundational Model of Anatomy (subset) Excel format
48 FYPO Fission Yeast Phenotype Ontology Excel format
49 GAZ Gazetteer Excel format
50 GEO Geographical Entity Ontology Excel format
51 GO Gene Ontology Excel format
52 HAO Hymenoptera Anatomy Ontology Excel format
53 HINO Human Interaction Network Ontology Excel format
54 HOM homology_ontology Excel format
55 HP human phenotype ontology Excel format
56 IAO Information Artifact Ontology Excel format
57 IAO-Onto-Meta IAO Ontology Metadata Excel format
58 ICO Informed Consent Ontology Excel format
59 IDO Infectious disease Excel format
60 IDOBRU Brucellosis Ontology Excel format
61 IDOMAL Malaria Ontology Excel format
62 IEV Event (INOH pathway ontology) Excel format
63 IMR Molecule role (INOH Protein name/family name ontology) Excel format
64 INO Interaction Network Ontology Excel format
65 LINCS-CLOview CLO LINCS view Excel format
66 MA Mouse adult gross anatomy Excel format
67 MAT Minimal anatomical terminology Excel format
68 MF Mental Functioning Ontology Excel format
69 MFO Medaka fish anatomy and development Excel format
70 MFOEM Emotion Ontology Excel format
71 MI Protein-protein interaction Excel format
72 MIAPA MIAPA Ontology Excel format
73 miRNAO microRNA Ontology Excel format
74 MIRO Mosquito insecticide resistance Excel format
75 MMO Measurement method ontology Excel format
76 MO Microarray experimental conditions Excel format
77 MOD Protein modification Excel format
78 MP Mammalian phenotype Excel format
79 MPATH Mouse pathology Excel format
80 MS Mass spectrometry Excel format
81 NBO Neuro Behavior Ontology Excel format
82 NCBITaxon NCBI organismal classification Excel format
83 NDF-RT National Drug File Reference Terminology Excel format
84 NIF_Cell NIF Cell Excel format
85 NIF_Dysfunction NIF Dysfunction Excel format
86 NIF_GrossAnatomy NIF Gross Anatomy Excel format
87 NMR NMR-instrument specific component of metabolomics investigations Excel format
88 OAE Ontology of Adverse Events Excel format
89 OBCS Ontology of Biological and Clinical Statistics (OBCS) Excel format
90 OBI Ontology for Biomedical Investigations Excel format
91 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view Excel format
92 OBIB Ontology for Biobanking Excel format
93 OBIws OBI web service, development version Excel format
94 OCRe OCRe Excel format
95 ODNAE Ontologyof Drug Neuropathy Adverse Events Excel format
96 OGG Ontology of Genes and Genomes Excel format
97 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana Excel format
98 OGG-Bru Ontology of Genes and Genomes - Brucella Excel format
99 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans Excel format
100 OGG-Dm Ontology of Genes and Genomes - Fruit Fly Excel format
101 OGG-Dr Ontology of Genes and Genomes - Zebrafish Excel format
102 OGG-Mm Ontology of Genes and Genomes - Mouse Excel format
103 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum Excel format
104 OGG-Sc Ontology of Genes and Genomes - Yeast Excel format
105 OGI Ontology for genetic interval Excel format
106 OGMS Ontology for General Medical Science Excel format
107 OGSF Ontology of Genetic Susceptibility Factor Excel format
108 OHD Oral Health and Disease Ontology Excel format
109 OMIABIS Ontologized MIABIS Excel format
110 OMIT Ontology for MicroRNA Target Excel format
111 OMRSE Ontology of Medically Related Social Entities Excel format
112 OPL Ontology for Parasite LifeCycle Excel format
113 OVAE Ontology of Vaccine Adverse Events Excel format
114 PATO Phenotypic quality Excel format
115 PCO Population and Community Ontology Excel format
116 PD_ST Platynereis stage ontology Excel format
117 PO Plant Ontology Excel format
118 PORO Porifera Ontology Excel format
119 PR PRotein Ontology (PRO) Excel format
120 ProPreO Proteomics data and process provenance Excel format
121 PW Pathway ontology Excel format
122 REO Reagent Ontology Excel format
123 REX Physico-chemical process Excel format
124 RO OBO Relation Ontology Excel format
125 RS Rat Strain Ontology Excel format
126 SAO Subcellular anatomy ontology Excel format
127 SEP Sample processing and separation techniques Excel format
128 SIO Semanticscience Integrated Ontology Excel format
129 SO Sequence types and features Excel format
130 SPD Spider Ontology Excel format
131 STATO STATistics Ontology (STATO) Excel format
132 SWO Software ontology Excel format
133 SYMP Symptom Ontology Excel format
134 TADS Tick gross anatomy Excel format
135 TAO Teleost Anatomy Ontology Excel format
136 TAXRANK Taxonomic rank vocabulary Excel format
137 TGMA Mosquito gross anatomy Excel format
138 TO Plant Trait Ontology Excel format
139 TRANS Pathogen transmission Excel format
140 TTO Teleost taxonomy Excel format
141 UBERON Uber anatomy ontology Excel format
142 uberon_collected_metazoa uberon_collected_metazoa Excel format
143 UO Units of measurement Excel format
144 VariO Variation Ontology Excel format
145 vHOG verteberate Homologous Organ Groups Excel format
146 VICO Vaccination Informed Consent Ontology Excel format
147 VIVO-ISF VIVO-ISF Excel format
148 VO Vaccine ontology Excel format
149 VSAO Vertebrate Skeletal Anatomy Ontology Excel format
150 VTO Vertebrate Taxonomy Ontology Excel format
151 WBbt C. elegans gross anatomy Excel format
152 WBls C. elegans development Excel format
153 WBPhenotype C. elegans phenotype Excel format
154 XAO Xenopus anatomy and development Excel format
155 XCO Experimental condition ontology Excel format
156 YPO Yeast phenotypes Excel format
157 ZFA Zebrafish anatomy and development Excel format
158 ZFS Zebrafish developmental stages Excel format

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.